PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 529aa MW: 57884.5 Da PI: 5.923 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3.1e-15 | 146 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_009770281.1 146 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 205 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.2 | 5.6e-15 | 248 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_009770281.1 248 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 299 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-17 | 146 | 214 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-12 | 146 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.13E-22 | 146 | 215 | No hit | No description |
SMART | SM00380 | 6.0E-30 | 147 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 147 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-16 | 147 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 148 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.83E-25 | 248 | 309 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 248 | 309 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-10 | 248 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-34 | 249 | 313 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 249 | 307 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 249 | 307 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 289 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MDMDSSSENW LGFSLSNINS NSNNNSSINL PSNNSSELCL FQAFNSKPNS GVEENGKGAD 60 GPPKLEDFLG GTSSITAAAT EVCWENPATT TTTTSLCEYG SELKTIAASF LRSFSADQNN 120 SQNKQLAVVA LPPAKKAVET FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ 180 VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPVLNYEKE LEEMKSMTRQ EFVASLRRKS 240 SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL 300 NAVTNFDISR YDVKSIASSN LPVGGMNNIS KTSSESASES SKNVEGNRSD DRDRDISSAT 360 SAPFSSQAPN MVNLGFGLPI KQDVSDFWSI LGYTNDQNNG SKNPSANATF CHGPPDGTTI 420 QTQGTTIISM DLPATTTSLN EVNNSRVIFN EEGYYHQQQE QEQEQQSGSC STITSVPSDI 480 SMALNSNATT TTTLDGSNFG NWMPPSLHSF QTTAKNNLAP FQTPIFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770281.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 1e-147 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1U7VZ88 | 0.0 | A0A1U7VZ88_NICSY; AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
STRING | XP_009770281.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-133 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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