PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770170.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 304aa    MW: 33741.2 Da    PI: 5.6066
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17223257135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  XP_009770170.1 223 CKHCGSETTPQWRTGPMGPKTLCNACGVRYKSGRL 257
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-8018304IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.374217253IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-16217267IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-14219280No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.30E-14222269No hitNo description
PfamPF003201.5E-15223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEIPDFAGAG YFAHAIDSQF EHKPFDSMNN NKNNNNITVD DLLDFSKDEE VMTDAYFDAI  60
AGNSADSSSL TVVDSCNSLV SSGEEHFDGN LSYRSFTDAP FLTSELCIPH DNLAELEWLS  120
NFVEESFSTD DLQTLQFIPV TESPSTATTS TDNSSSVTVI SSPPAFPCKS RSKRSRAAPC  180
EWSSRLLLLP PTTVSSLDSN SSLKTTPCRR RESTDTSSTS RKCKHCGSET TPQWRTGPMG  240
PKTLCNACGV RYKSGRLVPE YRPAASPTFV STQHSNSHRK VIELRRQKEL RTNQAHQQQQ  300
LQMW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770170.10.0PREDICTED: GATA transcription factor 12-like
RefseqXP_016485909.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4BAJ10.0A0A1S4BAJ1_TOBAC; GATA transcription factor
TrEMBLA0A1U7W7D70.0A0A1U7W7D7_NICSY; GATA transcription factor
STRINGXP_009770170.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-56GATA transcription factor 9