PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769494.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 684aa    MW: 75722.4 Da    PI: 6.5291
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.52e-2970154187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+ aL+++r+em+  +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++f+qlea
  XP_009769494.1  70 RWPRQETIALLKIRSEMDLVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQLEA 154
                     8********************************************************************96..66678*******85 PP
2trihelix1041.1e-32483568187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r++++ +++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_009769494.1 483 RWPKAEVEALIKLRTQLDVKYQENGPKGPLWEEISAGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 568
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.005267129IPR001005SANT/Myb domain
CDDcd122032.27E-2569134No hitNo description
PfamPF138372.0E-1969155No hitNo description
PROSITE profilePS500906.88869127IPR017877Myb-like domain
PROSITE profilePS500907.468476540IPR017877Myb-like domain
SMARTSM007177.1E-5480542IPR001005SANT/Myb domain
CDDcd122031.28E-27482547No hitNo description
PfamPF138372.1E-22482569No hitNo description
Gene3DG3DSA:1.10.10.601.2E-4482539IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MLGVSGMISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG ISISGGFMTE EDRAIRNMEE  60
GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK  120
EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SLLLPPPITS SRPPPPPLEA  180
TPINMAMPMP SGNANTINLQ LPASQQQGTT TTVTVSSAPP NNIFVSSHQN TTSHQNIPLS  240
SSMAPSPQPA NNPINNLQAN TNFPSHQNIS AMSYSTSSST SSDEDIQRRH KKKRKWKDFF  300
ERLMKDVIDK QEDLQRRFLE TLEKRERDRM VREEAWRVQE VARMNREHDL LVQERSMAEA  360
KDAAVVSFLQ KITEQQNIQI PSNINVAPPS AQVQIQLPEN PPPPPATRSQ VVQQQTQPTV  420
LLSPAPPQPS PATPAPISLP GTIPAPVPAQ SLPLTPPVPA KNVELTPKSD NGGEGYTPAS  480
SSRWPKAEVE ALIKLRTQLD VKYQENGPKG PLWEEISAGM KKIGYNRNAK RCKEKWENIN  540
KYFKKVKESN KKRPEDSKTC PYFHQLDALY KEKAKNETSS SSFSNPSASG FALNPENNPM  600
MPIMARPEQQ WPLPPHHQQP QQHHESTRMD HDHESDNMDQ DEDDEDEEDE DEENAYEIVA  660
NKQQSSMAAA NTTTTTTASA TTTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286293QRRHKKKR
2286294QRRHKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769494.10.0PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_016452211.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391173e-78TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1S3YIY30.0A0A1S3YIY3_TOBAC; trihelix transcription factor GT-2-like
TrEMBLA0A1U7W4E10.0A0A1U7W4E1_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009769494.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-71Trihelix family protein