PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 28947.3 Da PI: 6.9024 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.3 | 1.9e-29 | 26 | 85 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.....kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG+e +AtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_009769431.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEsfgftEATPKSVLRLMGVKGLTLYHLKSHLQKYRL 85 79********************997444447****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 23 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-14 | 26 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-20 | 26 | 86 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-7 | 28 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-12 | 132 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE SFGFTEATPK 60 SVLRLMGVKG LTLYHLKSHL QKYRLGQQAK KQNAAEQNKE NSSGDSSGQF NLHSSGPGTS 120 SLSMNYIQGD VPIAEAVMSQ IEVQKRLQDQ LEVQQKLQMR IEAQVEATRA QLTDLDLPLS 180 NLMNYTNRQN RNDNIIGKTT HDDNIKEELQ RSNYIVEEEQ KSNMNLNFDL NSRNSYDFVG 240 ANAAVLEAKA LSHGRLET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 8e-34 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 8e-34 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769431.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X3 | ||||
Swissprot | C0SVS4 | 2e-58 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1U7VWU6 | 0.0 | A0A1U7VWU6_NICSY; myb family transcription factor APL isoform X3 | ||||
STRING | XP_009769428.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-52 | G2-like family protein |
Publications ? help Back to Top | |||
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