PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769429.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 277aa MW: 30962.8 Da PI: 9.381

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG+ekAtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_009769429.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEKATPKSVLRLMGVKGLTLYHLKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.834	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-32	23	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	26	81	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.96E-16	26	83	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-8	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-20	127	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE KATPKSVLRL 60 MGVKGLTLYH LKSHLQKYRL GQQAKKQNAA EQNKENSSGD SSGQFNLHSS GPGTSSLSMN 120 YIQGDVPIAE AVMSQIEVQK RLQDQLEVQQ KLQMRIEAQG KYLQVILSKA QKSIPVNMNS 180 PSAVEATRAQ LTDLDLPLSN LMNYTNRQNR NDNIIGKTTH DDNIKEELQR SNYIVEEEQK 240 SNMNLNFDLN SRNSYDFVGA NAAVLEAKAL SHGRLET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-32	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-32	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769429.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Refseq	XP_016486019.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
Swissprot	C0SVS4	8e-74	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1S4BAV0	0.0	A0A1S4BAV0_TOBAC; myb family transcription factor APL-like isoform X2
TrEMBL	A0A1U7W471	0.0	A0A1U7W471_NICSY; myb family transcription factor APL isoform X2
STRING	XP_009769428.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-67	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]