PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 282aa MW: 31503.3 Da PI: 8.6991 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.1 | 2.2e-29 | 26 | 85 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.....kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG+e +AtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_009769428.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEsfgftEATPKSVLRLMGVKGLTLYHLKSHLQKYRL 85 79********************997444447****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 23 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-14 | 26 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-20 | 26 | 86 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 28 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-20 | 132 | 178 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE SFGFTEATPK 60 SVLRLMGVKG LTLYHLKSHL QKYRLGQQAK KQNAAEQNKE NSSGDSSGQF NLHSSGPGTS 120 SLSMNYIQGD VPIAEAVMSQ IEVQKRLQDQ LEVQQKLQMR IEAQGKYLQV ILSKAQKSIP 180 VNMNSPSAVE ATRAQLTDLD LPLSNLMNYT NRQNRNDNII GKTTHDDNIK EELQRSNYIV 240 EEEQKSNMNL NFDLNSRNSY DFVGANAAVL EAKALSHGRL ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-17 | 26 | 84 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 9e-34 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 9e-34 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769428.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X1 | ||||
Swissprot | C0SVS4 | 1e-70 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1U7VSU9 | 0.0 | A0A1U7VSU9_NICSY; myb family transcription factor APL isoform X1 | ||||
STRING | XP_009769428.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-64 | G2-like family protein |
Publications ? help Back to Top | |||
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