PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 476aa MW: 52819.2 Da PI: 6.4629 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 149 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009769089.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.6 | 3e-13 | 241 | 290 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k XP_009769089.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 290 89********.7******5553..2.26**********99**********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.95E-12 | 149 | 208 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-16 | 149 | 207 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-9 | 149 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 150 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 150 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-17 | 150 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.59E-24 | 241 | 301 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-17 | 241 | 301 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-9 | 241 | 289 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.172 | 242 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-30 | 242 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-16 | 242 | 300 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MFDLNLGFEE FAMDDDTVHV SYDTATSEKL RELQLENSGT SNSSIVNVET SSTAGDDEFF 60 SCSDDRRRND GFAFDILRGN DYEESEFVTK ELFPLTGGES SSAAELLSPQ QWLDLSANYG 120 GPAEQRIVVV PQQRQQVKKS RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGLD ADINFNVADY HDDLKQMSNF TKEEFVHILR RQSTGFSRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAAIKCS GKEAVTNFEL 300 STYEGELSTQ DDGGASHNLD LNLGIASSSL ADEQHGNTCQ MVNSEFLLAS NGLTEYKGAM 360 HSPSTTMGSK LPHRRQPLTD RPLLWNGVNT SVFPTFKGTA IGKGMEVDSS PNWARQDQHP 420 YGGSPSVPLF STAASSGFAN STSAAAHQHH FSTGSLPYHH SPSLANMNFA HYYCRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF132002 | 0.0 | AF132002.1 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769089.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-101 | AP21_ORYSI; APETALA2-like protein 1 | ||||
Swissprot | Q8H443 | 1e-101 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A1U7W387 | 0.0 | A0A1U7W387_NICSY; floral homeotic protein APETALA 2-like isoform X1 | ||||
STRING | XP_009769089.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-103 | related to AP2.7 |
Publications ? help Back to Top | |||
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