PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768581.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 253aa    MW: 30476.7 Da    PI: 6.5852
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix828.1e-2635117186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r em++++ ++k++k lWe ++ km+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  XP_009768581.1  35 QWSIQETKDFLMIRGEMDQNFMETKRNKLLWEVIATKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEAEA--L-RQQFPFYNELQ 117
                     7********************************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.21E-243499No hitNo description
PfamPF138371.4E-2135119No hitNo description
PROSITE profilePS500907.2243692IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGQPNLYHQ HQFVSQQNLL NIDTGGVGGG DRFPQWSIQE TKDFLMIRGE MDQNFMETKR  60
NKLLWEVIAT KMKEKGYNRS AEQCKCKWKN LVTRYKGCET MEAEALRQQF PFYNELQAIF  120
MERMLRMEAE EEENDEDSEE EKGGNKKKRK LKGNTSSSSN VASGNLVGNL KEILDDFMNK  180
QMEMEMQWQK EYERREEERK IKEMEWRQKM EAVQNERLMM EKRWRKREEQ WKMREETRAE  240
KRDALITALL NKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768581.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804508e-63TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U7VUG00.0A0A1U7VUG0_NICSY; trihelix transcription factor GT-3b-like
STRINGXP_009768581.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-50Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]