PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009768516.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 325aa MW: 37283.1 Da PI: 6.9825

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009768516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183	7e-57	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke+++ XP_009768516.1 16 LPPGFRFHPTDEELITHYLAPKVLDCNFSA-KAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCIRDKKYPTGQRTNRATEAGYWKATGKDKEIFK- 108 79************************99.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+gekt+Wvmheyrl XP_009768516.1 109 SKTLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.828	16	166	IPR003441	NAC domain
Pfam	PF02365	6.7E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
METVCGFEGY EEEMELPPGF RFHPTDEELI THYLAPKVLD CNFSAKAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFKSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSVHNL PKSAQNECVI CRVFKKTSGG KKIAISSLIR 180 NNNMTESPRS SNLPPLMDMS PYNNQITTTT RSSGETSNSH VTCFSDSMED QKPQTHQPLA 240 CSPPSVDFPK YPSNIPNQVM QPYIENFQYV DSGLMQDNSI LRLLLENNNY GSESKHNIHL 300 RGYEDHNDFN INSAGPVDLD CLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	5e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	5e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT740994	0.0	KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768516.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-122	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U7VUA0	0.0	A0A1U7VUA0_NICSY; NAC domain-containing protein 100-like
STRING	XP_009768516.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-124	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]