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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009768392.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 670aa MW: 73859.9 Da PI: 6.3592 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 92.6 | 3.2e-29 | 216 | 269 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
XP_009768392.1 216 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 269
79*******************.********************************8 PP
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| 2 | Response_reg | 75.8 | 1.6e-25 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l++ +y ev+ +e al ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + + G
XP_009768392.1 35 VLVVDDDPTCLRILEKMLRNCHY-EVTKSNRAEIALSLLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKDVVMKGVTHG 127
89*********************.***************99999***********************6644.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
XP_009768392.1 128 ACDYLIKPVRIEALKN 143
************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 7.2E-183 | 11 | 661 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 2.56E-35 | 32 | 156 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 6.4E-42 | 32 | 183 | No hit | No description |
| SMART | SM00448 | 1.4E-29 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.142 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 6.0E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 2.92E-27 | 36 | 149 | No hit | No description |
| PROSITE profile | PS51294 | 11.2 | 213 | 272 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 8.42E-21 | 214 | 273 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 215 | 274 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.7E-25 | 216 | 269 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.0E-8 | 218 | 268 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 670 aa Download sequence Send to blast |
MNLGVGSVVK NMSGASCSVS WKSNDNNQFP AGLRVLVVDD DPTCLRILEK MLRNCHYEVT 60 KSNRAEIALS LLRENRNGFD IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKDVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVIR KKKHEWKDKD FDQSATAEEG DRQQKPSEDV 180 DYSSSANEGG NWKSSKRRKE EEDETEERDD SSSLKKPRVV WSVELHQQFV QAVNQLGIDK 240 AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSQH PSGLNNSFMG HPEATYGMSS 300 FNGLELQALA ATGQLPAQSL ATLQAAALGR SATKGATLSM PLVDQRNIFS FENPKLRFPE 360 GQQQLNNSNK QINLLHGIPT TMEPKQLADL HQSSQSFGAM NMQGNSRVQQ NNALLMHMPQ 420 QQPSRAQMLN ETNNGSQVSR PPLTMSQQSL SSNGIPGALL SRSGGIVANV RGPVHSPVSQ 480 ASPIVDFSLN QNTELQNNSF PLVRSNSGMS TMTSKRMLQE EVNSDIKRSR GFPSGYNMFD 540 ELHQQKSQDW GLSGVGSTFD AITGTLDVSP SMLVQQGISS MKRNGQNGSS PISNAFSSSR 600 EESGNVNPMG GNFLTVKAEQ LPDASYQNNF FPDQFGQDDL MSALLKQQES VGPVESEFGF 660 DGYALDNLPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-21 | 212 | 275 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JF412542 | 0.0 | JF412542.1 Nicotiana tabacum RRB2 type-b response regulator mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009768392.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A1S4BBS3 | 0.0 | A0A1S4BBS3_TOBAC; Two-component response regulator | ||||
| TrEMBL | A0A1U7VK29 | 0.0 | A0A1U7VK29_NICSY; Two-component response regulator | ||||
| STRING | XP_009768392.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3191 | 24 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-167 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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