PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767653.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 352aa    MW: 38506.8 Da    PI: 7.1983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-0893117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ G C+y  +C+FaHg
  XP_009767653.1  93 YKTKLCCKFRA-GVCPYITNCNFAHG 117
                     9**********.*************8 PP
2zf-CCCH18.73.1e-06177197626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+    C+yGd+C+F H+
  XP_009767653.1 177 CKKFYTEEGCPYGDSCTFLHD 197
                     99999999************7 PP
3zf-CCCH44.33e-14231256126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_009767653.1 231 WKTRICNKWETTGYCPFGSKCHFAHG 256
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-889123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-1590125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.81292119IPR000571Zinc finger, CCCH-type
SMARTSM003560.004892118IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-593117IPR000571Zinc finger, CCCH-type
SMARTSM003560.24171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638171199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-8173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-17227261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10227261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422230258IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9230257IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDFMGEAGFA VGNMIQDSTA SSGGFGSWGP NFSDQAVWAT EDDYRAWNSN ETPSNSQNRS  60
GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE  120
LRKPPPNWQD IVAAHESERG GGGGVLAVEP REEHQIPILT SPDLRGESQR STKGRHCKKF  180
YTEEGCPYGD SCTFLHDEQS RARESVAISV TPTVGGFGNN ATGTTLKPSN WKTRICNKWE  240
TTGYCPFGSK CHFAHGVAEL NRFGGGPVET EGKDSLSVPP DLKQGGSSFK TTESTVPSTI  300
SALHTDVYHL GQGVQVQRPS SIVERPGQRL FQKWKGPDKI SKIYGDWIDD IE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767653.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_016484512.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-122C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S4B6N80.0A0A1S4B6N8_TOBAC; zinc finger CCCH domain-containing protein 12-like
TrEMBLA0A1U7VMQ80.0A0A1U7VMQ8_NICSY; zinc finger CCCH domain-containing protein 12-like
STRINGXP_009767653.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-124C3H family protein