PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 302aa MW: 33038.1 Da PI: 7.0876 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.6 | 1.2e-29 | 168 | 224 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy+rIl+RRq+Rak+e ekk +k+rkpylheSRh+hAlrR+R+sgGrF XP_009767514.1 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKARKPYLHESRHQHALRRARASGGRF 224 69************************9999.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.1E-32 | 166 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.8 | 167 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.4E-25 | 169 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.8E-23 | 170 | 192 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.8E-23 | 201 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MPSNTTSANR EEPNAYNGPR SAVYSEPWWN SAGYNPVSPG LMRGTASDSS SLEQSMDGQS 60 QSDGGINEEE DDAPEKSQSI VPLHADGSYG QADQNFQPAA PTIPPKLDGT LTQTQQLALV 120 GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPHEMAQEP VYVNAKQYRR 180 ILQRRQSRAK AELEKKQIKA RKPYLHESRH QHALRRARAS GGRFAKKTDA DASKGAGSVS 240 SSGSEPLQFN AADVQNRHGN RRLAELQHSY SNGSSYGNQS SFQESKDEYQ SAESREGDSS 300 GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-17 | 168 | 232 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014146 | 0.0 | BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767513.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_009767514.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_016469807.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A1S3ZZD3 | 0.0 | A0A1S3ZZD3_TOBAC; nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A1U7VMC5 | 0.0 | A0A1U7VMC5_NICSY; nuclear transcription factor Y subunit A-1-like | ||||
STRING | XP_009767513.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 1e-55 | nuclear factor Y, subunit A1 |