PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767386.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 289aa    MW: 31786.9 Da    PI: 8.3569
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.9e-20207241135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009767386.1 207 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 241
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.9E-17201255IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136201237IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-15203265No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14204239IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.81E-15206255No hitNo description
PfamPF003202.4E-17207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKMEALDPSA ASCFMVDVDD DLLNFSLEDE TVFDDDEKTT KSITKHKHPL SSSYSSSLDS  60
SNPVLSLLPS QQHPECVEEE LEWLSNKDAF PAVEFGILAD NPSIVFDHHS PVSVLENSSS  120
TCNSSGNGSA NANAYMSCCA SLKVPVNYPV RARSKRRRRR QRGSFADLPS EHCMSVNKPS  180
FKSIKQREPL LSLPLNSAKS ASIGRRCQHC GADKTPQWRA GPLGPKTLCN ACGVRYKSGR  240
LLPEYRPANS PTFSPTVHSN SHRKVLEMRK QKIGVGGMMI HEACGYRVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159KRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076900.0AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767386.10.0PREDICTED: GATA transcription factor 1-like
TrEMBLA0A1U7VR160.0A0A1U7VR16_NICSY; GATA transcription factor 1-like
STRINGXP_009767386.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-44GATA transcription factor 1