PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767382.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 341aa    MW: 38052.1 Da    PI: 8.8827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.6e-21138187255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a++k++g
  XP_009767382.1 138 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEDAARAYDEAALKFRG 187
                     7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.475138195IPR001471AP2/ERF domain
SMARTSM003801.1E-39138201IPR001471AP2/ERF domain
PfamPF008472.8E-14138187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-34138196IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-23138196IPR016177DNA-binding domain
PRINTSPR003673.2E-12139150IPR001471AP2/ERF domain
CDDcd000181.00E-29146197No hitNo description
PRINTSPR003673.2E-12161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCILKVANFR NKAIYKPIRD DVMFSGINRE EEMSVMVSAL TRVVRGEDKV LSQGEGCDIG  60
AANSGVSPSL YSISGGVGEK RGREEQSEQL FLADIRSSGG ESSNIRTIAS NTPTTESTFT  120
YITPTYGEGN INHQPRRRYR GVRQRPWGKW AAEIRDPYKA TRVWLGTFDT AEDAARAYDE  180
AALKFRGSKA KLNFPENVKL LPTSSTHEQS QLKLFPHQNA VGNLGLPTST FPTDYVENTR  240
VSSFSNNYPI IHTQPNYYYN NTNINPQIFL NDDFQRLQPP SSLLNQFQYS SSSSSSLSSS  300
SQLPFLPRMF FQGSQPPQNS GNDFRATSSD STYDHPSSSS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24137198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562518e-78CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755168e-78HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767382.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_016473785.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S4AAU40.0A0A1S4AAU4_TOBAC; ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1U7VH140.0A0A1U7VH14_NICSY; ethylene-responsive transcription factor ERF113-like
STRINGXP_009767382.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-26ERF family protein