PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765952.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 461aa    MW: 52011.2 Da    PI: 4.56
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34721632102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gk++ll++
  XP_009765952.1  72 FLSKTFDLVDDSSLDFIISWGSKGESFVVWDPVEFSRMILPKNFKHNNFSSFVRQLNTYGFRKVDADR---------WEFANEGFLRGKRHLLKN 157
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r++s
  XP_009765952.1 158 IQRRRS 163
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.22E-3367161IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5668161IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.7E-3668161IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-3072161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNPFDKNPIS QPSGSESDTL PPHSITMDPE FAVFSEAPSS HFINLESFSA GEEGLGVVQP  60
MECLHGTQIP PFLSKTFDLV DDSSLDFIIS WGSKGESFVV WDPVEFSRMI LPKNFKHNNF  120
SSFVRQLNTY GFRKVDADRW EFANEGFLRG KRHLLKNIQR RRSPQSHQAG SSSAEAGKGT  180
MDEIEKLRKE KSSMMQEVVE LQQQQRGTVQ QMEAVNEKLQ AAELRQKQMV SFLAKVFQNP  240
AFLARLRQMK EQEKITSPRT MRKFVKHQPH DQDRLESSIE GQIVKYRPDF QDLVTSFENP  300
DFNPVVDQQL PETGFGAEAM LFKNQERVIE GASNFNPEDS YFEGKNVASP QLEVMPECFV  360
SFPEELAKEK NILEFCSPGI GSMVKEEEVW SMGFEASAGM SSTVTELWGS LSNYDVPDFG  420
VSAGLPDVLW DIDPLQEAGS SGVDKWPNDE SPFGQPKNDS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-236716115120Heat shock factor protein 1
5d5u_B7e-236716124129Heat shock factor protein 1
5d5v_B7e-236716124129Heat shock factor protein 1
5d5v_D7e-236716124129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765951.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765952.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765953.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765954.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765955.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016498724.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A1S4CCN00.0A0A1S4CCN0_TOBAC; heat stress transcription factor A-3-like
TrEMBLA0A1U7VVI40.0A0A1U7VVI4_NICSY; heat stress transcription factor A-3
STRINGXP_009765951.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-101heat shock transcription factor A3