PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009765927.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 440aa MW: 50051.7 Da PI: 9.6378

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009765927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6.3e-26	31	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y eYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k+ ++ +++r+etrtgC a++ +++++dgk+++t+++++HnH+l XP_009765927.1 31 CYIEYAAALGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRG-QTVQKHRKETRTGCLAHIIISRQSDGKFRITSFQEKHNHPLD 118 799**************************************999.99999*********************************97 PP
2	FAR1	84.3	2e-26	175	262	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFs rk++ +ksk +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++g++++t++e++HnH+l XP_009765927.1 175 WYNEYAAAMGFSARKEYANKSKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGTFRITSFEEKHNHPLD 262 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-23	31	119	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-23	175	263	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEITSSESQG GFNVPIKLGM EFDSDEQAYE CYIEYAAALG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRGQTVQ KHRKETRTGC LAHIIISRQS DGKFRITSFQ EKHNHPLDPS 120 SLSHILPSQR KIKVAQAHEV TARFMEITYS ESQGGFNVPI KLGMEFDSDE HAYEWYNEYA 180 AAMGFSARKE YANKSKVQGY VTSRKFTCHK EGYRSKDKRD RTVQKHRKET RTGCLAHIII 240 SRQSNGTFRI TSFEEKHNHP LDPSLSDMLP SERKIKVAQA HKVSVRYKHL CEIFAQISSE 300 ASESKEGYEL AAKCANELVA KLKHVKKRNE SHEDSAPSKS IENELNETIF IDNTNATKLT 360 GLKRKQPTHR SNTRTMSFME MTKSKNNTSL LKSPQCQTDK KLDHLPSLLS CQVTCPSLSD 420 ASMTMGVPEG SCLKDHPMKV

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEITSSESQG GFNVPIKLGM EFDSDEQAYE CYIEYAAALG FSVRKEYANK NKVQGYVTSR  60
KFTCHKEGYR SKDKRGQTVQ KHRKETRTGC LAHIIISRQS DGKFRITSFQ EKHNHPLDPS  120
SLSHILPSQR KIKVAQAHEV TARFMEITYS ESQGGFNVPI KLGMEFDSDE HAYEWYNEYA  180
AAMGFSARKE YANKSKVQGY VTSRKFTCHK EGYRSKDKRD RTVQKHRKET RTGCLAHIII  240
SRQSNGTFRI TSFEEKHNHP LDPSLSDMLP SERKIKVAQA HKVSVRYKHL CEIFAQISSE  300
ASESKEGYEL AAKCANELVA KLKHVKKRNE SHEDSAPSKS IENELNETIF IDNTNATKLT  360
GLKRKQPTHR SNTRTMSFME MTKSKNNTSL LKSPQCQTDK KLDHLPSLLS CQVTCPSLSD  420
ASMTMGVPEG SCLKDHPMKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765927.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_009765928.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_016460557.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A1S3Z8M5	0.0	A0A1S3Z8M5_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A1U7VCX0	0.0	A0A1U7VCX0_NICSY; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_009765927.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	6e-31	FAR1-related sequence 7