PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 35970.1 Da PI: 5.1337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W++++ + g++R+ k+c++rw +yl XP_009765566.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTKTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_009765566.1 67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.873 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.09E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 20.018 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTKTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKMKNLE 120 EKCSGDDDLF SVENGHNLSS TNSTSRGQWE RTLQADINMA KKALHSALSL ENSTPYIKQE 180 TPAPVSTYAS STENIARLLQ GWMRSSSTNN SENSKTSSNN IATTDSSSCD GTPSAESKGG 240 MVLMEALESL FGLESFEPSS SDQLSQTASP EGSKFQVEIK KEENTNSQLP LSVMLENWLL 300 DENTIQGKDD LTSFSFDETA DLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-26 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-26 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X99134 | 1e-143 | X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765566.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Refseq | XP_016463903.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-103 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A1S3ZHJ1 | 0.0 | A0A1S3ZHJ1_TOBAC; myb-related protein 306-like | ||||
TrEMBL | A0A1U7VKS9 | 0.0 | A0A1U7VKS9_NICSY; myb-related protein 306-like | ||||
STRING | XP_009765566.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-103 | myb domain protein 94 |
Publications ? help Back to Top | |||
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