PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765392.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 279aa    MW: 30995.4 Da    PI: 8.4621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061217239223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+  Fs+   L +H ++ H
  XP_009765392.1 217 QCPQCSLKFSSVAALISHVQKvH 239
                     7******************9988 PP
2zf-C2H216.23e-05251273223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+k F+++ +L+ H  + H
  XP_009765392.1 251 VCPRCSKGFRDPVSLVEHVEReH 273
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.97E-11752No hitNo description
PROSITE profilePS510397.5141059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.8E-91153IPR000058Zinc finger, AN1-type
SMARTSM001540.00421352IPR000058Zinc finger, AN1-type
PfamPF014288.0E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-1090147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.92E-993147No hitNo description
PROSITE profilePS510397.85598145IPR000058Zinc finger, AN1-type
SMARTSM001540.024101142IPR000058Zinc finger, AN1-type
PfamPF014284.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.015216239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.57E-5217269No hitNo description
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
SMARTSM003557.2250273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182250278IPR007087Zinc finger, C2H2
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGTPAFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLDHR SYNRHHCPKA NKNDVTVVVC  60
PLCAKGIRLI PDEDPNITWE SHVNIECDPS NYEKATKKRK CPVPGCREIL TFSNTIKCRE  120
CTVDHCLKHR FGPDHKCPGR KKPEAAFPFL NFRTGSRKDE PKKAPATSSS SWATNLFKAA  180
EAGMSKLSSE FSQTLQMGKE GISGTNRSGS GSGQVEQCPQ CSLKFSSVAA LISHVQKVHE  240
KNGVMNLTVD VCPRCSKGFR DPVSLVEHVE REHRGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-179HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765392.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
RefseqXP_016478515.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-121SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1S4APP00.0A0A1S4APP0_TOBAC; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
TrEMBLA0A1U7VBI40.0A0A1U7VBI4_NICSY; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_009765392.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]