PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764839.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 670aa    MW: 73468.8 Da    PI: 9.2964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07571620147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009764839.1 571 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 620
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.16E-8378467IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.876566625IPR017930Myb domain
SMARTSM007172.0E-7570623IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10571621IPR009057Homeodomain-like
CDDcd116601.99E-17572622No hitNo description
SuperFamilySSF466891.2E-15572653IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSARRRG IIRRKADGDG TCPFDLLATV AGKLLGEGES  60
SPDSTCSPRG KEQNAIVKDE KIKEKSYAEG CYERGFFISE LVSQAPVVNR SLSELPHAQN  120
DTISGPASVT MSSDCSEKLP FAKQFVNGET REEEHGVFSS CILDTESDKQ IKIELSNNAK  180
VSTTKGAAIS SSEFPDVWDK KPSTLLVTSD DSVKLSLSPY PAPCRAFPVI RNDVKLDNRD  240
DDENFGCTQP STPNKASGSA PRVRDRPIKK LLASKYWEEN LKSDNEGHAN TGGKTMHAYH  300
NRNSAHQRSQ RDFPFKKRKL FKCGSFSNSD GEMSTDGICS SPTSDLHGNA SGYSKASSGG  360
GAAAGTSVFN GGRASFKPSD SCVKFRIKSF RVPDLFVEIP ENATVGSLKR TVMEAVTAIL  420
GGGLRIGVVF QGKKVRDDNK TLLQTGISHD YKLDALGFSL EPNPIQASPP LGPDCRSCVL  480
PCDTPQPLTR CLSPAITGIQ QGRSDDHTGT CLNNFVESDR DSAPSPHYTA LEKISANSRA  540
LIPVTAVNAE ALAVVPLRKP KRSEATQRRI RRPFSVAEVE ALVQAVEKLG TGRWRDVKLR  600
AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM  660
KQPSETYLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-565586614107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309318QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-124HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764838.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_009764839.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
TrEMBLA0A1U7VEQ50.0A0A1U7VEQ5_NICSY; telomere repeat-binding protein 5 isoform X1
STRINGXP_009764838.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-125TRF-like 2