PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764801.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 355aa    MW: 38981.5 Da    PI: 7.7633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30168227159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a gCpvkkkv+rs ed++vv+ tYegeHnh+
  XP_009764801.1 168 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApGCPVKKKVQRSIEDQSVVVATYEGEHNHP 227
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-29159227IPR003657WRKY domain
PROSITE profilePS5081127.175163229IPR003657WRKY domain
SuperFamilySSF1182901.44E-25165228IPR003657WRKY domain
SMARTSM007743.0E-35168228IPR003657WRKY domain
PfamPF031061.1E-24169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPLPV LDKVLKQEVQ SNFTGLSRDN TLVKDEAGDL LEELNRVSSE  60
NKKLTEMLTV VCENYNALRN QLMEYMNNQN NGVVDDSAGS RKRKAENISN PNNNNNKNNN  120
LDIVCGRLSE SSSSDEESCC KKPREEHIKT KVSVVSMRTE ASDTSLIVKD GYQWRKYGQK  180
VTRDNPSPRA YFRCSFAPGC PVKKKVQRSI EDQSVVVATY EGEHNHPVNP SKPEAAAGTA  240
TSTGSRLNVR TIGGTTASVP CSTTLNSSGP TITLDLTEPT TVAKGDIMKM SSSISPTGGS  300
SQRTTEGDHY SRPEFQQFLI EQMASSLTKD PSFKAALAAA ISGKILQHNN QTSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-211672301375WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280220.0AB028022.1 Nicotiana tabacum wizz mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764801.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A1U7VIR20.0A0A1U7VIR2_NICSY; probable WRKY transcription factor 40
STRINGXP_009764801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-87WRKY DNA-binding protein 40