PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764664.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 350aa    MW: 38187.3 Da    PI: 6.869
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-0893117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ G C+y ++C+FaHg
  XP_009764664.1  93 FKTKLCCKFRA-GVCPYINNCNFAHG 117
                     69*********.*************8 PP
2zf-CCCH17.86.1e-06172195326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C+ f+    C+yGd+C+F H+
  XP_009764664.1 172 GRHCKKFYTEEGCPYGDTCTFLHD 195
                     5669*****9*************7 PP
3zf-CCCH437.7e-14229254126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_009764664.1 229 WKTRICNKWETTGYCPFGSKCHFAHG 254
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-890123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1490125IPR000571Zinc finger, CCCH-type
SMARTSM003560.008992118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66292119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-9167197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7168197IPR000571Zinc finger, CCCH-type
SMARTSM003560.38169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10225259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-17225258IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422228256IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFMGEASFA GGNMIPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRDWNTG PSSETPSSSN  60
RSGSEPPHKK SRSSQGADSH VTSRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE  120
LRKPPPNWQE IVAEHESEHG GGGVMLESRE EHQIPTVSSP ELRIETQRSF KGRHCKKFYT  180
EEGCPYGDTC TFLHDEQSRA RESVAISVTP TVGGFGNNAA GANLKPSNWK TRICNKWETT  240
GYCPFGSKCH FAHGAAELHK YGGGLMEMEG KDPLSTPPDL RQGGGSLKTT ESTVPSTISA  300
PHTDVYHLGP GVQVQRPSGV VQGAGHRVIQ KWKGPDKISK IYGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764664.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-123C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7VQM60.0A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like
STRINGXP_009764664.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein