PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009764488.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 357aa MW: 40018.9 Da PI: 8.9278

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009764488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.9	9.5e-17	23	105	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er +++ + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + XP_009764488.1 23 WTVEETMVLIEAKKMDDERRMKRQgegtsteirgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVA 105 ***********977776665433455556666558899************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	15	91	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.2E-4	17	92	IPR009057	Homeodomain-like
Pfam	PF13837	3.6E-13	22	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDRVVGNQSG GSNMLREYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEIRGNKPG 60 ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNNNNNNQE 120 IIIKSYWKIE RSERKEKNLP TNMLPEIYEA LVQVVDRKCT QKLLVGGGGG TSAAAAPLNQ 180 STSLTNSLSP TLQQQSFQAQ IAALPLPPPP TLSPPAVVAQ QSAQPPSLPY TRPLPAMCDS 240 SDPDRSEHSD SPAKRRRKGE GEGTSSGNNN NINNLQEVGS AIFKSAAIIA ETIQASEERE 300 ERRHRELLSL HERRLQIEES KAEINRQGIN GLVDSINRLA NSILSLAGNK NQAAPPK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDRVVGNQSG GSNMLREYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEIRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNNNNNNQE  120
IIIKSYWKIE RSERKEKNLP TNMLPEIYEA LVQVVDRKCT QKLLVGGGGG TSAAAAPLNQ  180
STSLTNSLSP TLQQQSFQAQ IAALPLPPPP TLSPPAVVAQ QSAQPPSLPY TRPLPAMCDS  240
SDPDRSEHSD SPAKRRRKGE GEGTSSGNNN NINNLQEVGS AIFKSAAIIA ETIQASEERE  300
ERRHRELLSL HERRLQIEES KAEINRQGIN GLVDSINRLA NSILSLAGNK NQAAPPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764488.1	0.0	PREDICTED: uncharacterized protein LOC104216186 isoform X1
TrEMBL	A0A1U7VDR9	0.0	A0A1U7VDR9_NICSY; uncharacterized protein LOC104216186 isoform X1
STRING	XP_009764488.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-57	Trihelix family protein