PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764398.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 542aa    MW: 60458.5 Da    PI: 4.5846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.9e-53101371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yL++k+ gk+l++ ++i+e+diykvePwdLp  +++k+++ ewyfFs  dkk+ +g ++nratk+gyWk+tgkd++v+
  XP_009764398.1  10 LAPGFRFHPTDEELVRYYLRRKIIGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSMLDKKHGNGAKTNRATKRGYWKTTGKDRAVH 103
                     579*************************99.99***************6347788888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + k+++vg+kktLv+++grapkg++t+Wvmhey+l
  XP_009764398.1 104 H-KSKVVGMKKTLVYHSGRAPKGQRTNWVMHEYKL 137
                     *.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-618160IPR003441NAC domain
PROSITE profilePS5100558.07210160IPR003441NAC domain
PfamPF023655.8E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MESRRSKNLL APGFRFHPTD EELVRYYLRR KIIGKPLRFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSMLDKKHGN GAKTNRATKR GYWKTTGKDR AVHHKSKVVG MKKTLVYHSG  120
RAPKGQRTNW VMHEYKLIDE ELDKAGIAQD AFVLCRIFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELEIVPK EEAVDEVEFG DDIYLDGHDL EQILGTDTPV DGAPPPFNRY CEENASNSGG  240
TSNSFEDTEK WLQPPDEQES FDPAIEENAN ANPVKHEFMS EPSKNVNSED VDYLLNEPIE  300
TATDTLQSND GAFLEASDLS RPIDTSSFDM LEEYLTFFDA DDDFQNMGFN PPMMTGGDDH  360
VSDLASLADK NIGKVAEQPV APSEEPADQK TNVASSSKLE PSKFGSDYKY PFMKQASCML  420
GGIPAPPAFA SEFPSKDAAF RMNSSSEASS SIHVTAGYIQ IRNMTMGGNG TDGLVGKHGN  480
YNILLSFGLS QHADSSASLE SVVSILPGKT ISAASWCWFY YLFSWVLILS MSFKIGTLIR  540
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-451016620174NAC domain-containing protein 19
3swm_B9e-451016620174NAC domain-containing protein 19
3swm_C9e-451016620174NAC domain-containing protein 19
3swm_D9e-451016620174NAC domain-containing protein 19
3swp_A9e-451016620174NAC domain-containing protein 19
3swp_B9e-451016620174NAC domain-containing protein 19
3swp_C9e-451016620174NAC domain-containing protein 19
3swp_D9e-451016620174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764398.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016467787.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S3ZTU30.0A0A1S3ZTU3_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7VDG20.0A0A1U7VDG2_NICSY; NAC domain-containing protein 78-like
STRINGXP_009764398.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-134NAC domain containing protein 53