PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764202.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 319aa    MW: 36819.5 Da    PI: 5.3088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.6e-28116176259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++s+edp v+e+tY+g+Hn++
  XP_009764202.1 116 DDGYSWRKYGQKDILGANHPRAYYRCTHKntqGCLATKQVQQSDEDPLVFEVTYKGKHNCK 176
                     8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28112177IPR003657WRKY domain
SuperFamilySSF1182904.05E-26113177IPR003657WRKY domain
SMARTSM007741.1E-41115177IPR003657WRKY domain
PfamPF031062.8E-27116176IPR003657WRKY domain
PROSITE profilePS5081123.709116178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKVKAWEKK TLITELTQGM EFVNRLKSKI DPLASPEECD LLLEKILSSL DKSLSILNLK  60
AFNVIREPYW CSKNEVSDLD YYSRDQGKNM VFKKRKLLQQ WSKQVRISGI EGPNYDDGYS  120
WRKYGQKDIL GANHPRAYYR CTHKNTQGCL ATKQVQQSDE DPLVFEVTYK GKHNCKASQS  180
VDISEENQKA NYNKNQYQLQ KQKVGNQNVE KLNIIKEETL SFTPLKSESE KSQFFANSMD  240
PFTSPITSES LYLPLFPTQE EELEMDQILQ SSKLSHIEFS TTPTSVINSP FCGYSDLSVD  300
DQVDNIYPNL MIDISEFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20114176769OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087559e-93KJ808755.1 Nicotiana tabacum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764202.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_016435685.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3X6S10.0A0A1S3X6S1_TOBAC; probable WRKY transcription factor 41
TrEMBLA0A1U7V7T80.0A0A1U7V7T8_NICSY; probable WRKY transcription factor 41
STRINGXP_009764202.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-40WRKY family protein