PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764184.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 329aa    MW: 36676.7 Da    PI: 9.9926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32258315359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  XP_009764184.1 258 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 315
                     99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.0E-19208254IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33244315IPR003657WRKY domain
PROSITE profilePS5081131.054251317IPR003657WRKY domain
SuperFamilySSF1182903.53E-27253315IPR003657WRKY domain
SMARTSM007742.7E-38256316IPR003657WRKY domain
PfamPF031062.9E-27258314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAVELMMDYR NTRNCTLVTK LEEKTVVEEA SSGLESVEKL IRLLSQTQTQ TQSQQIQQQK  60
QGYLEQKNSP MEIEMVADAA VTKFKKVISL LDRNRTGHAR FRRAPVASSP SQISIKDFVD  120
TKVYSPTPIQ QIPLVSYDNY SQQLSLVPKT ISFSYSPEMS RTNSFNISTL TGETESKQHS  180
SSSAFQITNL SQVSNSAGKP PLSSSSLKRK CSLSENAVSG KCSGSSGRCH CSKRRKLRLK  240
RVVRVPAISM KMADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERALDD  300
PTMLIVTYEG EHNHSLSVAE TSSLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21244316273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8743930.0KJ874393.1 Nicotiana tabacum putative WRKY transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764184.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_016479490.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX06e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4ASF70.0A0A1S4ASF7_TOBAC; probable WRKY transcription factor 7
TrEMBLA0A1U7VPA60.0A0A1U7VPA6_NICSY; probable WRKY transcription factor 7
STRINGXP_009764184.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-76WRKY DNA-binding protein 15