PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009762052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 203aa MW: 23015.1 Da PI: 8.9543 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.2 | 8.6e-66 | 8 | 169 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++seq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt++ +vn+a a q +++s +++ + +++++ e +++ +++ ++++ XP_009762052.1 8 TNSEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNMWTVNMAAAFQSSSSSSWQSHTHHLHQVANYTPPEYKIDFGSSSKCNSRNMAVRP 102 579*********************************************99999999987777777777787777777777666666666655555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l++n +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl XP_009762052.1 103 SLTNNPREERI----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 169 56555555544....8*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-71 | 9 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.94E-8 | 110 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.4E-4 | 123 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MATCIDSTNS EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNMWT VNMAAAFQSS 60 SSSSWQSHTH HLHQVANYTP PEYKIDFGSS SKCNSRNMAV RPSLTNNPRE ERIVNRPPEK 120 RQRVPSAYNQ FIKEEIQRIK ANNPDITHRE AFSTAAKNWA HFPHIHFGLT LETKNQAKLG 180 ASENAEKHII HRAAMPKIKN FTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762052.1 | 1e-152 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016452662.1 | 1e-152 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 7e-80 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3YL24 | 1e-150 | A0A1S3YL24_TOBAC; axial regulator YABBY 5-like | ||||
TrEMBL | A0A1U7V1C3 | 1e-150 | A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1 | ||||
STRING | XP_009762052.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-78 | YABBY family protein |
Publications ? help Back to Top | |||
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