PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761650.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 371aa    MW: 43223.6 Da    PI: 8.1801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-066484323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cg sF  + +Lk+H+++H
  XP_009761650.1 64 CEECGVSFQKPAHLKQHMQSH 84
                    *******************99 PP
2zf-C2H2188.1e-0690114123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC  s++rk++L+rH+  H
  XP_009761650.1  90 FVCHidDCQSSYRRKDHLTRHLLQH 114
                     89*******************9887 PP
3zf-C2H2163.5e-05119144123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp   C++sFs + n++rH +  H
  XP_009761650.1 119 FECPvdGCKRSFSIQGNMTRHVKEmH 144
                     89********************9988 PP
4zf-C2H219.33.2e-06158182123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk+F+  s Lk+H  +H
  XP_009761650.1 158 YVCSepGCGKVFKFASKLKKHEDSH 182
                     89*******************9888 PP
5zf-C2H219.13.6e-06249273223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+  dC  +Fs+ksnL +H +  H
  XP_009761650.1 249 KCEfqDCQHTFSTKSNLIKHVKAvH 273
                     79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355481538IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.88E-961114No hitNo description
PROSITE profilePS5015711.8846289IPR007087Zinc finger, C2H2
SMARTSM003550.00956284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-76488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-989116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.41190119IPR007087Zinc finger, C2H2
SMARTSM003550.02790114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-6100144No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5117144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.91119144IPR007087Zinc finger, C2H2
SMARTSM003556.5E-4119144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-8153182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.35E-5156184No hitNo description
PROSITE profilePS5015711.136158187IPR007087Zinc finger, C2H2
SMARTSM003550.0038158182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003558.8190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
SMARTSM0035513218239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.37E-10230286No hitNo description
PROSITE profilePS5015713.609248278IPR007087Zinc finger, C2H2
SMARTSM003559.3E-4248273IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-6249275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280250273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-5276301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.8279305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGEEREVIFR DIRRYYCEFC GICRSKQSLI SSHILSYHQD EMEKRKDEAN EDAKIKKCPK  60
LNICEECGVS FQKPAHLKQH MQSHSLERLF VCHIDDCQSS YRRKDHLTRH LLQHQGKLFE  120
CPVDGCKRSF SIQGNMTRHV KEMHDHCASP EANLPKHYVC SEPGCGKVFK FASKLKKHED  180
SHVKLETMEA LCLEPGCMKH FTNEKCLKEH IESCHQHIVC EICGTKQLKK NIKRHLRTHE  240
EESTSERIKC EFQDCQHTFS TKSNLIKHVK AVHLGDKPFS CSIVGCDMKF AFKHVRDRHE  300
KSGCHVYTPG DFIEADEQFR SRPRGGRKRK LPVFEAIMRK RITPPCGTDP VFYQGSEYLS  360
WLLSAESDEE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-156621019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-156621019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321329RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0986000.0KX098600.1 Nicotiana benthamiana transcription factor IIIA 9ZF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432452.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-125TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3WXV90.0A0A1S3WXV9_TOBAC; transcription factor IIIA-like
STRINGXP_009761650.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-127transcription factor IIIA