PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009761269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 56842.6 Da PI: 4.8892 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.3 | 1.5e-83 | 117 | 485 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 ++lLl Aea+++g+l la+ ++ rl+++ s + + p+ Rla yft++L + ++ s++el ++ + + +ss++++a+++++e+sP++ XP_009761269.1 117 TDLLLMGAEAIEAGNLDLASVVVLRLNTILSDQENrensPIDRLALYFTQGLLYKSLStSSHELLNQNQFQ----PESSSSITAFQMLQEISPYV 207 5789999********************996666544555************97665551444444333333....4578999************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 kf+h+taNqaIlea++g+++vHi+Dfdi +G+QWp+L+ L +R + slRiT+v+ +++++ +++tg+rL++fA+++++pf f+ + ++ XP_009761269.1 208 KFAHFTANQAILEATKGSQQVHILDFDILEGIQWPPLMVDLVERGNINSSLRITAVVV-DKNNSFLVQKTGKRLQEFADSINLPFMFDQVFLTKD 301 *********************************************************9.667999************************866666 PP GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklp 276 edl e++ v+++ +l+ n++++ +++++ sl + + + +++lsPkvvv+ve+e ++ + sF+e f+eal++y+++ ds+ +++ XP_009761269.1 302 EDL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---IFFNGLRRLSPKVVVLVEEElfnlTKIPTMSFVEFFCEALHHYTTISDSILGGFG 391 665..777246669*********9999*988888888...9*******************7554455778********************66666 PP GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 + +++E+e+lg +i ++v + +e+ er ekW+e l + GF+++p+s++++ qak+l++ ++ gy v++e+ l l+Wk+rpL++ XP_009761269.1 392 GGYkLALRVIEKEFLGVRILDCVRQFPSEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTT 481 65538999********************96666....56***997658***********************.89********************* PP GRAS 370 vSaW 373 +S W XP_009761269.1 482 ASIW 485 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.721 | 90 | 467 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-81 | 117 | 485 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEYENFQPTY MNPFLEYSNL ETTFSLKNSS INPHCSIQDF VTVVNDVDIQ DYFQNDFDFI 60 DRDVDFPVQN SQKFPLFSSQ VLVQEDTGFL KEGKKLRVYS PELKLLQDQL MEETSITDLL 120 LMGAEAIEAG NLDLASVVVL RLNTILSDQE NRENSPIDRL ALYFTQGLLY KSLSTSSHEL 180 LNQNQFQPES SSSITAFQML QEISPYVKFA HFTANQAILE ATKGSQQVHI LDFDILEGIQ 240 WPPLMVDLVE RGNINSSLRI TAVVVDKNNS FLVQKTGKRL QEFADSINLP FMFDQVFLTK 300 DEDLENIQGV ESHNNLIANV MIHQLHIPQR GSSLVKIFFN GLRRLSPKVV VLVEEELFNL 360 TKIPTMSFVE FFCEALHHYT TISDSILGGF GGGYKLALRV IEKEFLGVRI LDCVRQFPSE 420 KSEREKWSEG LYSLKGFRQI PMSSSNVRQA KHLVSLFSGG YWVQNEHCKL ALCWKSRPLT 480 TASIWVPTSS SSSPSSSISF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-42 | 124 | 489 | 27 | 382 | Protein SCARECROW |
5b3h_A | 2e-42 | 124 | 489 | 26 | 381 | Protein SCARECROW |
5b3h_D | 2e-42 | 124 | 489 | 26 | 381 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761269.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1U7VG12 | 0.0 | A0A1U7VG12_NICSY; nodulation-signaling pathway 2 protein-like | ||||
STRING | XP_009761269.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13366 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-43 | GRAS family protein |