PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009760862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 332aa MW: 36293.7 Da PI: 7.4189 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.9e-18 | 239 | 272 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + XP_009760862.1 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.8E-72 | 2 | 328 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 6.4E-18 | 233 | 283 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.517 | 233 | 269 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.9E-15 | 237 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 3.09E-15 | 237 | 296 | No hit | No description |
CDD | cd00202 | 1.34E-13 | 238 | 285 | No hit | No description |
Pfam | PF00320 | 2.3E-15 | 239 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 239 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MGSNMVDEID CGSFFDQIDD LIEFPSENEC GGFSSTDCKE FPSIWDQPSD PLFSGSYNNS 60 PSDLSAELSV PYEDIVQLEW LSTFVEDSFS AGGLTLGKEN APINKETSHS KFQSSSPVSV 120 LESSGSSSSS SCSGGKTIPL SPCHRGPQRA RSKRPRPATF NPRPAIQLIS PTSVFIENPR 180 PFVAPVTSSE SGNFAQSPMK KIPRPAAAEQ KTKKKIKFTI PLAPIETNQN STAHAVRRCM 240 HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSMH SNSHKKVLEM 300 RTKDIPENNA TARTQIPATI TEHEFSKSSV EE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 152 | 156 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760862.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_009760863.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016497965.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016497966.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A1S4CA08 | 0.0 | A0A1S4CA08_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7UXU6 | 0.0 | A0A1U7UXU6_NICSY; GATA transcription factor | ||||
STRING | XP_009760862.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-40 | GATA family protein |