PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760719.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 38074.6 Da PI: 8.5524 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1e-50 | 35 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv++yL++kve+k++++ + ikevdiyk++PwdLp +++ + kewyfFs r++ky+++ r+nr+t sg+Wkatg dk+v+s+ XP_009760719.1 35 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DLIKEVDIYKHDPWDLPrNTAGDNCKEWYFFSMRERKYRNSVRPNRVTGSGFWKATGIDKPVYST 128 59***************************.99***************445555667**************************************8 PP NAM 96 ....kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_009760719.1 129 tttsQ--StdrgcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 168 66541..156666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.167 | 34 | 200 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-53 | 34 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-26 | 36 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSEKRAEKIE NMELVENIAT ATNIKAEDEE EIMQLPGFRF HPTDEELVSF YLRRKVENKR 60 IKMDLIKEVD IYKHDPWDLP RNTAGDNCKE WYFFSMRERK YRNSVRPNRV TGSGFWKATG 120 IDKPVYSTTT TSQSTDRGCI GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP NWKTSNQQLP 180 NPKNSIPEAE VWTLCRIFKR TSNYKRFTPD WKQPIIEQSF GDASSKACSL QSETSDNHSI 240 NINFKKMEFP HKNNNTAIGG NYQVDQRTTD YNNSQPIITM PQSSITSSNS SFWNTSAEEQ 300 YLFSDGNWDE LKSVVDLAID PRSLFGFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 21 | 206 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 21 | 206 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 21 | 206 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 21 | 206 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-48 | 21 | 206 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 21 | 206 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 2e-47 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760719.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
Swissprot | Q9SK55 | 7e-87 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U7VEG4 | 0.0 | A0A1U7VEG4_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
STRING | XP_009760718.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-85 | NAC domain containing protein 42 |