PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009759483.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 319aa MW: 37206.8 Da PI: 6.3592

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.5	7.5e-23	67	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a+++++e++ ++ kk++W+++s +m+erg ++sp+qC++k++++nk++k+++++ +++t + ++++ ++++ ++ XP_009759483.1 67 KWTDDMVKLLITAVSYIGEDVLSNGvfIKKGKWRAISCVMAERGHHISPQQCEDKFNDMNKKFKRLNDILGRGTaCHVVENPALLEMMD 155 7*****************998654589******************************************5488888888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-20	65	180	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MCFSSHAPEV MSFGVSNMED IDQEMQLLDS IKLNSVEMPE AYHEGMNDVT EVSGHAEEKQ 60 PVYHRMKWTD DMVKLLITAV SYIGEDVLSN GVFIKKGKWR AISCVMAERG HHISPQQCED 120 KFNDMNKKFK RLNDILGRGT ACHVVENPAL LEMMDLSDNL KEEMKKLLGS KQLFYQEMCS 180 YNNQNRLFLP HDQEVQQSVL LAVKGKDKCD TKNVLQDLPL KRKTSGEERV SKDKRVSMNN 240 EEREIQDEHS LPRLRQLEEQ KLQIQAQILE LEKKRFKHMR FCSKEDKELQ KMMLDNEVIK 300 LENQRLVLEL KLSGMRPFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759483.1	0.0	PREDICTED: uncharacterized protein LOC104212013 isoform X3
TrEMBL	A0A1U7UZA4	0.0	A0A1U7UZA4_NICSY; uncharacterized protein LOC104212013 isoform X3
STRING	XP_009759481.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	3e-72