PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009758423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 251aa MW: 28595.3 Da PI: 8.0157 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61 | 1.5e-19 | 183 | 217 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l XP_009758423.1 183 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 217 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.057 | 177 | 213 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.9E-18 | 177 | 231 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-16 | 179 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-15 | 180 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.85E-15 | 182 | 230 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 208 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.2E-17 | 183 | 217 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNMVEVLDST TCFMVDDDIL NFSLDEEKHP SISSSSLDSS LPDDHSRSFH EYVEEELEWL 60 SNKDAFPAVE FDIFSENIPN VIFDHHSPVS VLENGSSIST NNNSCIENDK ENAFMIGCGS 120 LQVPVNYPVR ARGKRRRRIS FADLTNERCV WGRKLKFKNN KQEWELLSLP MTKAKRASIG 180 RRCQHCGVDK TPQWRAGPMG PKTLCNACGV RYKSGRLLPE YRPANSPTFS ANLHSNSHRK 240 VMEMRKQRIG I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | KRRRRI |
2 | 134 | 155 | RRRRISFADLTNERCVWGRKLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 3e-76 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758423.1 | 0.0 | PREDICTED: GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 8e-43 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A1U7UW56 | 0.0 | A0A1U7UW56_NICSY; GATA transcription factor 1 | ||||
STRING | XP_009758423.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 6e-45 | GATA transcription factor 1 |