PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757727.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 490aa    MW: 53952 Da    PI: 6.6745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09306353455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009757727.1 306 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 353
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17300370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-10300357No hitNo description
PROSITE profilePS5088815.663302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16302367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6306353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEKDYFMNGG ITNPPLQFEP TMTNWNSLHS GQSSDFFLNP NWDHDSTHQF NQFDSTLNSV  60
VSSSHAELIG KLSTVSSSSQ PPFNNNNINT NNSCYTTPKL HMPNLGNSVP LNPPLPAVST  120
DPGFAQRAAK FSCFGSRSFN GRTSPLTQRS AQQLENGKLP RVSSSPSLKQ AGSPLQTKNS  180
GQTRMELMST NLGRPITNSN ESVSEPSGET GPKTPTELNS TRKRKTASSG KTEEAAPANG  240
NMGDDNARTK RCKQVVVEGN ETENGTVNME ESKGNNEGDE TQNQKPPEPP KDYIHVRARR  300
GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS  360
MKLASVNPSL DFPAENLLPK DICQPNGSLP QPVFPVNYQQ PRQQHTDIPN GVLSQCSANT  420
LDNSLFRTLG MQLPSLDGLG EYLNQFPTMC EDDLQSIVQM GFSQNPNKDL TLQSQSFPGP  480
HQTSHMKIEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225TRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754486e-33HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755216e-33HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757727.10.0PREDICTED: transcription factor bHLH62-like
RefseqXP_016477458.10.0PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBLA0A1S4AM050.0A0A1S4AM05_TOBAC; transcription factor bHLH62-like isoform X1
TrEMBLA0A1U7UNK70.0A0A1U7UNK7_NICSY; transcription factor bHLH62-like
STRINGXP_009757727.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-90bHLH family protein