PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757682.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 412aa    MW: 46984.5 Da    PI: 7.1533
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP148.44.9e-461222762133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaes 77 
                     +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++                   s       +++s
  XP_009757682.1 122 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAITELSENipqkdysdgnkiinsnsssS------EDQKS 210
                     79**************************************************************98887777766554322110......12222 PP

             TCP  78 ssssas.........nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                     +s +++         ns+++ +++ +  + +++ s+  ++n++k esr+karararert+ekm+ik
  XP_009757682.1 211 ESLMSEcevlsrweeNSNNEGKERGKDINMNDRLSEMVQNNPHKrESRNKARARARERTKEKMMIK 276
                     222222334444433333336666676777777777778999999******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-45122274IPR005333Transcription factor, TCP
PROSITE profilePS5136935.596124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.52255272IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MFPSGNSQEP FNPYTSKALL EKSFTYNHHQ NPSSSSRQED LASFLNFPSP FLDDHNNELP  60
LNQILSHQHH QDQEAGDHHH VKESNFTHNI SCEASKEEMS IEAAKTSSKK RNLSATPPRR  120
RTGKKDRHSK ICTAQGVRDR RVRLSLHIAR KFFDLQDMLG FDKASKTIEW LFSKSNNAIT  180
ELSENIPQKD YSDGNKIINS NSSSSEDQKS ESLMSECEVL SRWEENSNNE GKERGKDINM  240
NDRLSEMVQN NPHKRESRNK ARARARERTK EKMMIKGLDK KCNKQWYETN PNSGTNIFDH  300
LGSSSNSGFL DQEYSNNNSY NNTSVNQEKD SPLEASSQSL EHPFISNYYA NSTAAIGGLD  360
SGNCFLGFLG NWEYAPMAYA GNPSSIYLAN SSYQFQPLDQ EKHLSCRHHR QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1663670.0AY166367.1 Nicotiana sylvestris clone 12.4 TCP gene, partial sequence.
GenBankAY1681630.0AY168163.1 Nicotiana sylvestris NsTCP1 TCP protein (TCP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757682.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U7UNF70.0A0A1U7UNF7_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009757682.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-30TCP domain protein 12