PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757518.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 270aa    MW: 30761.4 Da    PI: 7.3444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11102154155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ h  +Er RR+++ + +  Lr+llP  +   ++K s ++  + Av+YI++L+
  XP_009757518.1 102 KKVVHRNVERHRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLR 154
                     6788*************************65..********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1498173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-999158No hitNo description
PROSITE profilePS5088813.211101153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-10102174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013107159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDNYLWEIFS SKQNTEQDHD HDHHHQLLQI PNFQLNGFCQ QDQIPNQDLI GGPREISSVN  60
SNNNYASVPT TMSSVNRSNL DNSNKGLIRR PESTISSTDD SKKVVHRNVE RHRRQEMANL  120
LTSLRSLLPL EFIKGKRSAS DHMQIAVNYI RHLRKNIEEL DNRRKQIKNS LDNLGAENGS  180
SSTCYVHNNS VAVNTCQDGM EILINVNSHK EEMFSLSKVL RWLLQEGLNV VSCVNSKQDE  240
WTLIRIQCQV SDISGVSTVG LQKKLTDLIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757518.10.0PREDICTED: transcription factor bHLH118-like
RefseqXP_009757519.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1U7UTJ00.0A0A1U7UTJ0_NICSY; transcription factor bHLH118-like
STRINGXP_009757518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-24bHLH family protein