PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_026215-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 302aa MW: 35641.6 Da PI: 7.1133

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_026215-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	6.8e-20	62	138	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 ++Yn+YA+e+GF +r+++s +++++e + + ++Cs+eg++++++++ r r+etrtgC a+l+vk+ +++kw+vt++ NNU_026215-RA 62 NYYNNYARELGFGIRVKSSWFREKSKEKYAAVLCCSREGFKRQRETN-----RIRPETRTGCPAMLRVKLVDSKKWKVTEVY 138 69***************************************9988.....99***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-17	62	138	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	9.3E-8	189	223	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.497	189	225	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-4	200	227	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDEVSLNSLP LPEDEGNEYG TEKECEMMEP DVQKSPVVTQ RNNEIVPPFV GMEFESYGGA 60 YNYYNNYARE LGFGIRVKSS WFREKSKEKY AAVLCCSREG FKRQRETNRI RPETRTGCPA 120 MLRVKLVDSK KWKVTEVYTK EIFKKFQYEV EEMFSCFNTT QIHADGPIII YVVKERVESQ 180 GNRKEIKYYE VLYNASEVEV RCTCNWFNLK GYLCRHALTV LNYNGIVEIP SQYILSRWRK 240 DFKHMHIPDY GSKDVDINNP LQWCEHLYKR AVQVLDEGIK SQEHYKVTLQ ALEELLDKVR 300 HL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247641.1	1e-115	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_010247642.1	1e-115	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	2e-62	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1U7ZHG3	1e-113	A0A1U7ZHG3_NELNU; protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A1U7ZIT6	1e-114	A0A1U7ZIT6_NELNU; protein FAR1-RELATED SEQUENCE 6-like isoform X2
STRING	XP_010247641.1	1e-114	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	9e-65	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]