PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025705-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 457aa MW: 51689.1 Da PI: 5.8055

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025705-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.6	3e-22	128	225	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++ v++Li++++ +++++ + +kk++W+ vs+ m+e+g+ +sp+qC++k+++lnkryk+++e+ +++ t++++++ +++d NNU_025705-RA 128 KWTDNVVRLLIAVVSFVGDDVTPEGvdglkrksgvlQKKGKWKTVSNIMMEKGCYVSPQQCEDKFNDLNKRYKRLNEILGRGtTCRVVENPALLDT 223 7************888887754334455666788******************************************77*******999 PP trihelix 85 le 86 ++ NNU_025705-RA 224 MT 225 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-19	126	250	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDNSVMGAGL LSGSTSGILE LEPSIQRHQQ SHSVSHHHHL QAMNSLTGLN GDHSMGFMEA 60 KSTAPKGMPM NCSKGKGFTK AGVATSAAAN NNSSNTSDED EPSYNEDGND PHFNGARGKK 120 GSPWQRMKWT DNVVRLLIAV VSFVGDDVTP EGVDGLKRKS GVLQKKGKWK TVSNIMMEKG 180 CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCRVVENPAL LDTMTNITAK MKDDVRKILS 240 SKHLFYKEMC XYHNGQRIPN THDFDLHSLP ATRCSEGNGF EGEEDVENED CDDGDSDDED 300 DNNAEEDAER MGEFGKRREN EEDGNLWLQS GIYNSFAAEI AGVLQDPTKS TWEXREWIRN 360 QLLQLQVKRV NLQAEAFELE KRHLKWLRFC NKKDRELELL RLNNERMRLE NERMTLQVKQ 420 IELELDFKRS EASLNPVSLG IDRRQGGRDQ IESGRVQ

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDNSVMGAGL LSGSTSGILE LEPSIQRHQQ SHSVSHHHHL QAMNSLTGLN GDHSMGFMEA  60
KSTAPKGMPM NCSKGKGFTK AGVATSAAAN NNSSNTSDED EPSYNEDGND PHFNGARGKK  120
GSPWQRMKWT DNVVRLLIAV VSFVGDDVTP EGVDGLKRKS GVLQKKGKWK TVSNIMMEKG  180
CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCRVVENPAL LDTMTNITAK MKDDVRKILS  240
SKHLFYKEMC XYHNGQRIPN THDFDLHSLP ATRCSEGNGF EGEEDVENED CDDGDSDDED  300
DNNAEEDAER MGEFGKRREN EEDGNLWLQS GIYNSFAAEI AGVLQDPTKS TWEXREWIRN  360
QLLQLQVKRV NLQAEAFELE KRHLKWLRFC NKKDRELELL RLNNERMRLE NERMTLQVKQ  420
IELELDFKRS EASLNPVSLG IDRRQGGRDQ IESGRVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246931.1	0.0	PREDICTED: uncharacterized protein LOC104590097
Refseq	XP_010246932.1	0.0	PREDICTED: uncharacterized protein LOC104590097
Refseq	XP_010246933.1	0.0	PREDICTED: uncharacterized protein LOC104590097
TrEMBL	A0A1U7Z7L8	0.0	A0A1U7Z7L8_NELNU; uncharacterized protein LOC104590097
STRING	XP_010246931.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-68	sequence-specific DNA binding transcription factors