PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025398-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 291aa    MW: 30833.6 Da    PI: 6.26
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025398-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.5e-10140184554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  NNU_025398-RA 140 HSIAERLRRERIAERMKALQELVPSS-----NKTDRAAMLDEIVDYVKFL 184
                    99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.50E-12133189No hitNo description
SuperFamilySSF474593.66E-15133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-15137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MANNPPEGLG DDFFEQILSI PYTGNDSTLV GNDGNLAGTA GSMVLQLSSG DGSGHVAGSG  60
FQGTVFPLGL SLEQAKSGFV KPEEASGSGK RFREEVDGKA SSGKNPFHGQ PTASTVASVP  120
HQPAIRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPSSNKTDR AAMLDEIVDY  180
VKFLRLQVKV LSMSRLGGAG AVAQLVADIP LTSVEGEGSE GGSSQRAWEK WSTDGTERQV  240
AKLMEEDVGA AMQFLQSKAL CIMPISLATA IYHAHPPEAP TAVKPESNTP S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246321.10.0PREDICTED: transcription factor UNE12-like isoform X3
SwissprotO227681e-113UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U7ZFM70.0A0A1U7ZFM7_NELNU; transcription factor UNE12-like isoform X3
STRINGXP_010246319.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.29e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]