PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025009-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31453.5 Da    PI: 7.6101
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025009-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-19137191256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  NNU_025009-RA 137 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 191
                    788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-40137226191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rl+keq++lLE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  NNU_025009-RA 137 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 226
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.427133193IPR001356Homeobox domain
SuperFamilySSF466892.27E-18135201IPR009057Homeodomain-like
SMARTSM003891.7E-16135197IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-18137191IPR009057Homeodomain-like
PfamPF000462.2E-16137191IPR001356Homeobox domain
CDDcd000861.74E-16137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
SMARTSM003401.3E-24193236IPR003106Leucine zipper, homeobox-associated
PfamPF021835.4E-10193227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGFEEDLCNT GLGLGLGCEG KPAETRPRST DHRRNKPCLN FDNLFLSSST TSMAITSDEP  60
SLTLSLSDEK YQAVKIDVNK ACDNSATDVC RQTSPHSGIS SFSNASVKKE RDLGNEELEV  120
EKVSSRASDE DEEGSARKKL RLTKEQSALL EDSFKEHSTL NPKQKQALAK QLNLRPRQVE  180
VWFQNRRART KLKQTEVDCE FLKKCCETLT DENRRLQKEL QELKALKLAQ PLYMQLPAAT  240
LTMCPSCERI GGITSDGSTK TSFAMAPKPH FFNPFTHPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245638.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466049e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U7Z4E70.0A0A1U7Z4E7_NELNU; homeobox-leucine zipper protein HAT22-like
STRINGXP_010245638.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-83HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]