PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024962-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 332aa    MW: 37399 Da    PI: 7.4151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024962-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17255289135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_024962-RA 255 CLHCLAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 289
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-14249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.873249285IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-14251312No hitNo description
Gene3DG3DSA:3.30.50.101.9E-13252287IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.69E-12254301No hitNo description
PfamPF003206.4E-15255289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MITHSQKKKE KERSQQPIIF LSLSLSFIFF SLHHLFLLKS EPHSLVLSPA GFSPLMESLE  60
TAACFVDDLL DFSSDIGEDD EEDDHNSSND TNKNNEPLSS SLTLPLDSKL SNNTHHQEPT  120
GLTIFDPDEH HHSFPEFLEE ELEWLSNEDA FPAVEAFDEF LLGKLSKGPK QQSPVSVLES  180
SGNGAIMSYC GNLRVPVRAR SKGRRRRRNG YSDISGQQWW WWWEPKNKSS GGGATTTKAA  240
KSTTTTTTTT MGRRCLHCLA EKTPQWRAGP LGPKTLCNAC GVRYKSGRLV PEYRPASSPT  300
FQSELHSNSH RKILEMRRQK HKEVLLKSMD KG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245657.10.0PREDICTED: GATA transcription factor 1-like
SwissprotQ8LAU96e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1U7Z0X50.0A0A1U7Z0X5_NELNU; GATA transcription factor 1-like
STRINGXP_010245657.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-39GATA transcription factor 1