PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024947-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family G2-like
Protein Properties Length: 427aa    MW: 46743.8 Da    PI: 6.547
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024947-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27161215156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++Wtp+LH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++
  NNU_024947-RA 161 KVKVDWTPDLHRRFVQAVEQL-GVDKAVPSRILEVMGIDCLTRHNIASHLQKYRSH 215
                    5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.291158217IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-26159218IPR009057Homeodomain-like
SuperFamilySSF466891.7E-17159218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26161215IPR006447Myb domain, plants
PfamPF002493.2E-7164213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLAVSPLRCS NDERQGEMES CPDGVGDFSD VFPGGNLLDG IDFDDLFVGI EDGDVLPDLE  60
MDPELLAEFS VSGCSGGEES AEKNASASVG KVEGNDSGRR EDEEEGKSWA SGLVSSSCQT  120
EENQEILSKR EEAVAVNPPP KVADKGRKSS TQPKASQGKR KVKVDWTPDL HRRFVQAVEQ  180
LGVDKAVPSR ILEVMGIDCL TRHNIASHLQ KYRSHRKHLL AREAEAASWS QRRQMHGGAG  240
GGSKRDHMNP WLKHVPTMGF PPPTPLQPFR PLHVWGHPSP TVDHSVMHMW PKHLVPSPPP  300
PWAPPPPDPY WHPHHQRVPT ALAPGTPCFQ QPLATTRFPT PPVRGIPPHP HAMYKLDKGS  360
GFPTAQSDYS HHPLDLHPSK ESIDAAIGDI LSKPWQPLPI GLKPPSLDSV LVELQLQGIS  420
KIPPNCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15158213257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245591.10.0PREDICTED: transcription activator GLK1 isoform X1
SwissprotQ9SIV32e-91GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A1U7Z4A50.0A0A1U7Z4A5_NELNU; transcription activator GLK1 isoform X1
STRINGXP_010245591.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-75GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]