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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_024204-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 308aa MW: 32656.2 Da PI: 8.0857 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.1 | 0.00058 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C++ F ++ L H++ H
NNU_024204-RA 109 FYCTYCKRKFDSSQALGGHQNAH 131
79*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 8.39E-6 | 106 | 137 | No hit | No description |
| PROSITE profile | PS50157 | 11.219 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 308 aa Download sequence Send to blast |
MSVMEAPVAE ACLSETSSVS AGSAGSSPCK DTEDRNNKGK LRETAEPAPK VISESGVSFD 60 LKLTHEELSE SSKQQELNLL NCLAGGSSSQ PPEAAPESRL KKSAERKSFY CTYCKRKFDS 120 SQALGGHQNA HKRERSMAKR EQGLAAIALG YPYGRYHPYS SISALHLNGS LNRSSPTASS 180 HVQLHPMIHK AYHPWSSSTT QGYRYSHGGG GGLRSAAMVN AQSAVSRLRM DDCWAGNNGF 240 RMPGVATFDS GAPINLFGDS SAIPALNIAA NRAVDGGGGG GCGDYHSRGV PSENHPSEAQ 300 EPDLSLKL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010244458.1 | 0.0 | PREDICTED: uncharacterized protein LOC104588288 | ||||
| TrEMBL | A0A1U7Z9R4 | 0.0 | A0A1U7Z9R4_NELNU; uncharacterized protein LOC104588288 | ||||
| STRING | XP_010244458.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G80730.1 | 3e-18 | zinc-finger protein 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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