PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024143-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 510aa MW: 53681.1 Da PI: 8.3267

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024143-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H NNU_024143-RA 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.1	0.0006	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ NNU_024143-RA 142 WKCDKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.9E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	66	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	66	88	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.2E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.9E-7	137	162	No hit	No description
SMART	SM00355	150	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MPVELENTSA VTVSTASAEA SASSSGNQAA PPSTTIKKKR NLPGTPDPEA EVIALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP ETSCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAEESARA QTVPNSNSEE DPKLPIVTTT PPPASSAVVS MALPIQNPEL 240 PENSTGILNH SSPATCLNGN SSTSSSNGSS SSSVFASLFV STAAPGNLQP QTSTFSELIC 300 AMARSERSTS LSSASALEPT SLCLSSNNGS SLFAQTGAER RQYAPPPQPA MSATALLQKA 360 AQMGATASNA SLLRGLGITV SSSSGQQENL RWDQRMEGEA APLAAGLGLG LPSEGSNGLT 420 ELMMGQSSMF GPKPTTLDLL GLGMGGGGSP TGRLSTLITS IGDGLDVAAA AASFGGGGNS 480 SGETWEEASE RKTNSPPTEK PPNVYLASLN

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MPVELENTSA VTVSTASAEA SASSSGNQAA PPSTTIKKKR NLPGTPDPEA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP ETSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESARA QTVPNSNSEE DPKLPIVTTT PPPASSAVVS MALPIQNPEL  240
PENSTGILNH SSPATCLNGN SSTSSSNGSS SSSVFASLFV STAAPGNLQP QTSTFSELIC  300
AMARSERSTS LSSASALEPT SLCLSSNNGS SLFAQTGAER RQYAPPPQPA MSATALLQKA  360
AQMGATASNA SLLRGLGITV SSSSGQQENL RWDQRMEGEA APLAAGLGLG LPSEGSNGLT  420
ELMMGQSSMF GPKPTTLDLL GLGMGGGGSP TGRLSTLITS IGDGLDVAAA AASFGGGGNS  480
SGETWEEASE RKTNSPPTEK PPNVYLASLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-38	138	207	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-38	138	207	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244313.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_010244314.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-171	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1U7YV58	0.0	A0A1U7YV58_NELNU; protein indeterminate-domain 2-like
STRING	XP_010244313.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]