PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023915-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 526aa    MW: 61028.6 Da    PI: 5.3981
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023915-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.71.3e-22138220286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W+++ +laL+++r+em+ ++r+++  +plWe vs+k++  g++++pk Ckek++n+ k yk+ k+ + ++  +  + +++ d+le
  NNU_023915-RA 138 WSQEDTLALLKIRSEMDAEFRDTNPSGPLWEIVSRKLEGLGYHKNPKNCKEKFKNIYKSYKRSKQKQVSN--QGDKMYKFVDELE 220
                    ******************************************************************9996..4455699999887 PP
2trihelix94.31.2e-29409492185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rW+k+ev+aLi++r++m++++r++  k p Wee+s +m++ g++rs+k+Ckekwen+nk++k+  e+ kkr +e+ +tcpyf++l
  NNU_023915-RA 409 RWPKSEVQALITLRTSMDRQFRSTGPKVPMWEEISLAMSSMGYSRSAKKCKEKWENINKYFKRSIESGKKR-PENAKTCPYFHEL 492
                    8********************************************************************98.99999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0012134196IPR001005SANT/Myb domain
PfamPF138375.3E-17137222No hitNo description
CDDcd122039.03E-17138201No hitNo description
PROSITE profilePS500906.655138194IPR017877Myb-like domain
PROSITE profilePS500907.317402466IPR017877Myb-like domain
SMARTSM007170.054406468IPR001005SANT/Myb domain
CDDcd122036.79E-24408472No hitNo description
PfamPF138372.2E-19408492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKHADFPDNI SPFPHAGDLL YCHRTALTYS NGTEFRPPLP LQKLRPIRGN RGEPVEYSEC  60
PANFHEVEFP EKAAPENLLN CQESVVALPP EIEFQPPVML QTLPPIRTGG DPTECCDSPA  120
NVSEVELPEE EGDTGNGWSQ EDTLALLKIR SEMDAEFRDT NPSGPLWEIV SRKLEGLGYH  180
KNPKNCKEKF KNIYKSYKRS KQKQVSNQGD KMYKFVDELE ALCSQNNNNP TAETLKLDDA  240
RIQTPDPVQN SHQIINVGTN SIDFWSDFSS SDEDNNDDSM SEDIIEPMNW KRKRKTRMKL  300
EVFFENLMHK VIKKQEEMHR QLMEIIEKRE RDRIIREEEW KQQEMERVKR DKEMRAQEAS  360
RSLAIISFIE KAMGQQFYIP PSPEYLYPGE EQDEKHDKTD HSFDPNNRRW PKSEVQALIT  420
LRTSMDRQFR STGPKVPMWE EISLAMSSMG YSRSAKKCKE KWENINKYFK RSIESGKKRP  480
ENAKTCPYFH ELAILYKNGF INSGNASNNA IKEDEDRSTT EEILAT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243939.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A1U7Z8G70.0A0A1U7Z8G7_NELNU; trihelix transcription factor GTL1
STRINGXP_010243939.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-46Trihelix family protein