PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_023606-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22474.9 Da PI: 8.039 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.2 | 2.9e-10 | 13 | 47 | 6 | 40 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ++++ tf+kR +g+ KK +EL +LCd+e +i f NNU_023606-RA 13 YRKARKTFIKRMQGLKKKMHELTTLCDIEGFIICF 47 5667789**********************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0095 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.568 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-10 | 5 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-10 | 14 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAQSRLASES IEYRKARKTF IKRMQGLKKK MHELTTLCDI EGFIICFDGL QQSNEDSAME 60 PIIWPENREK VLELINQYRN LESNTHSRKR EWGLLDFLEK QKKNLEDDLA KWRSKGRTLK 120 FPSMEESGID GFSAEQLKEM GKILELKLEM VKKRQEILKE KQGKGLEERG QIECFNTELY 180 PNYDIGLLGP VS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010243128.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1U7YSC7 | 1e-135 | A0A1U7YSC7_NELNU; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_010243128.1 | 1e-135 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 1e-12 | AGAMOUS-like 103 |