PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023472-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 210aa MW: 24215.1 Da PI: 5.8158

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023472-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	7	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i+e+d+yk+ePwdLp +k+k+++ +wyfF dkky +g+r+nrat++gyWk+tgkd++v + NNU_023472-RA 7 LAPGFRFHPTDEELVSYYLKRKVLGKPFRF-DAISEIDVYKSEPWDLPglSKLKTRDLQWYFFGALDKKYGNGSRTNRATDQGYWKTTGKDRPVRR 101 579************************9.99***********6448888888*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv++ grap+ge+t+Wvmheyrl NNU_023472-RA 102 -NNRTVGMKKTLVYHIGRAPRGERTNWVMHEYRL 134 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	7	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	9	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGGEAALAPG FRFHPTDEEL VSYYLKRKVL GKPFRFDAIS EIDVYKSEPW DLPGLSKLKT 60 RDLQWYFFGA LDKKYGNGSR TNRATDQGYW KTTGKDRPVR RNNRTVGMKK TLVYHIGRAP 120 RGERTNWVMH EYRLVDEELE RAGVQQDAYV LCRIFQKSGS GPKNGEQYGA PFIEEEWDDN 180 ENMLVPQGEI GDFALLNGGD DIYYNDNIEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	4	163	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	4	163	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	4	163	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	4	163	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-51	4	163	14	171	NAC domain-containing protein 19
4dul_B	2e-51	4	163	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:19887540, ECO:0000269\|PubMed:21889048}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:19887540}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243195.1	1e-154	PREDICTED: NAC domain-containing protein 53-like isoform X1
Swissprot	Q84K00	1e-102	NAC78_ARATH; NAC domain-containing protein 78
TrEMBL	A0A1U7YSI3	1e-152	A0A1U7YSI3_NELNU; NAC domain-containing protein 53-like isoform X1
STRING	XP_010243195.1	1e-153	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-105	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Gladman NP,Marshall RS,Lee KH,Vierstra RD The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] Tang Y,Zhao CY,Tan ST,Xue HW Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078. PLoS Genet., 2016. 12(8): p. e1006252 [PMID:27529511]