PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023107-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 220aa    MW: 24056.9 Da    PI: 6.0379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023107-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-1756105255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr  ++ g+Wv+ +r+p   +k+ r++lg+f t+e+Aa+a++ a+++l+g
  NNU_023107-RA  56 IYRGVR-ERNGGKWVCKVREP---NKKSRIWLGTFPTPEMAARAYDVAALALRG 105
                    69***9.7779******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.75E-3055115No hitNo description
PfamPF008475.8E-1255105IPR001471AP2/ERF domain
SMARTSM003804.9E-2956119IPR001471AP2/ERF domain
PROSITE profilePS5103222.44556113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3056115IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2156115IPR016177DNA-binding domain
PRINTSPR003671.1E-85768IPR001471AP2/ERF domain
PRINTSPR003671.1E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNYFEEESSA SSSSSELQGS NAPSNASSPS EANVSPAASH KRKAGRKKFR ETRHPIYRGV  60
RERNGGKWVC KVREPNKKSR IWLGTFPTPE MAARAYDVAA LALRGKSTPL NFPDSSCLLP  120
RAKSSLAVDI QAAALEAAEA FRPATASCTS SSSSHQGTKV ESEEKVAEDS TMFLDEEELF  180
NMPGLIHSMA EGLLLTPPPM QKGPDWDDMD CHMDFTLWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14541131272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242642.11e-163PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9FJ931e-57DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1U7YX911e-161A0A1U7YX91_NELNU; dehydration-responsive element-binding protein 1F-like
STRINGXP_010242642.11e-162(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-40C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]