PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022979-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 346aa    MW: 38599.4 Da    PI: 9.6995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022979-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.5e-19219252134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  NNU_022979-RA 219 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 252
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-19213264IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13213253No hitNo description
PROSITE profilePS5011412.73213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15217252IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.39E-12218246No hitNo description
PfamPF003204.9E-17219252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
FSSITFVPSP YLSLISLIPS YLLLPDTARH SLLLHRSFSS PMNPIYLNPS PSFFPIAPIE  60
PSDDEDQHLQ FFRPPSQAVA YSLSSSIFSN SSAQEGGGHD RERQEAVNGG PSDHQYFPDD  120
PPPPTVEDDI NSGLELSNSK QRENRGGSQG NMGSVRWMSS KMRLMRKMKN SDRVGMDKPV  180
NTNMHKFQQD HHHRSPSPWE MDTSSNSSSN NANNTVRVCS DCNTTKTPLW RSGPRGPKSL  240
CNACGIRQRK ARRAMAAANG TLLPTEASSM KNKVHHKEKR SSETGYVQQY KKRCKLATSP  300
RSMKKVCFED FTINLSKNSS FHRVFPQDEK EAAILLMALS CGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242203.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1U7Z4E40.0A0A1U7Z4E4_NELNU; GATA transcription factor 21-like
STRINGXP_010242203.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-29cytokinin-responsive gata factor 1