PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022850-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 37122 Da PI: 4.5339 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LA+ lgL+ rqV +WFqNrRa++k NNU_022850-RA 86 KKRRLTTDQVQFLEKSFEMENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWK 139 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.5e-42 | 86 | 175 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+++qv++LE+sFe+e+kLeperKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L ke+e+L++e+ NNU_022850-RA 86 KKRRLTTDQVQFLEKSFEMENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALRAKYNNLKADYDNLVKEKEKLKTEV 175 9**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-20 | 73 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-19 | 83 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.45E-18 | 84 | 142 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-20 | 88 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.8E-16 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAAGGRVYND SNMTVILQNE GIPCSSEALE TLLMSSSSPT FHGSSSMVSF EDVRRGKTPD 60 RSFFRPLEQQ DNGDEDLDEC FHQPGKKRRL TTDQVQFLEK SFEMENKLEP ERKVQLARDL 120 GLQPRQVAIW FQNRRARWKT KQLEKDYEAL RAKYNNLKAD YDNLVKEKEK LKTEVLSLTE 180 RLLLKEKEKG NSGTSDVNKP SDLQPQKPIP DSTSEERESE VPIVHVVCKQ EDISSANSDI 240 LDSESPHYTD AGHSSLLEPA DSSHIFEPDN SDLSQDEEDN LSRSLFPSVY YFPKLEDAVY 300 SDLPAHSCNY GFPSEDQALW FWSEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242341.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1U7YT99 | 0.0 | A0A1U7YT99_NELNU; homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_010242341.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-37 | homeobox 1 |