PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022543-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 377aa    MW: 43377.2 Da    PI: 7.9088
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022543-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.34.8e-24124221186
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                    +Wt+++v++Li+++++++e+  +++           +kk++W+ vsk+m+erg+ +sp+qC++k+++lnkryk++++  +++ +++++++ +++d 
  NNU_022543-RA 124 KWTDSMVRLLITIVSYIGEDAASECgnggrrkftilQKKGKWKLVSKVMAERGCYVSPQQCEDKFNDLNKRYKRLTDLLGRGtSCRVVENPALLDM 219
                    7******************99998778889999999**********************************************66999999999988 PP

       trihelix  85 le 86 
                    ++
  NNU_022543-RA 220 MD 221
                    86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-21122246No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEGNLSAGSM MPGASYGVLD LQGSIHAHHQ NPHTLHQQQQ QQQQQLSHPH QGSMLHPPMN  60
DVFPHTVGNM HECDQSISLV DYNKGDKGKG STSEEDEPSL TEDGVDGHAE PGKGKKGSPW  120
HRMKWTDSMV RLLITIVSYI GEDAASECGN GGRRKFTILQ KKGKWKLVSK VMAERGCYVS  180
PQQCEDKFND LNKRYKRLTD LLGRGTSCRV VENPALLDMM DISEKAKDDV RKILSSKHLF  240
YEEMCSYHNG NRLHLPADPA VQRFGNPSHE CNKLAFSHPQ TIPVDMNQVF PEGTKAAWSQ  300
KQWMKSRSLQ LEEQKIQIEA QMLELERERF KWQRFSRKKD RELDKMRMEN ERMKLENERM  360
ALELKHRELE ADFNRMP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326338RERFKWQRFSRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241711.10.0PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056198.10.0PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056199.10.0PREDICTED: uncharacterized protein LOC104586241
TrEMBLA0A1U7YP040.0A0A1U7YP04_NELNU; uncharacterized protein LOC104586241
STRINGXP_010241711.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-97